Molecular Biology
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100

The order of events leading to protein synthesis

What is Replication, Transcription, and Translation?

100

Self vs. Non-self

What is discrimination?

100

Most common cause of death in Sickle Cell Disease

What is Infection?

100

ADME

What are Absorption, Distribution, Metabolism, and Excretion?

100

Transition

What is one purine is substituted for the other purine  (A>G), or one pyrimidine is substituted for the pyrimidine (C>T)?

100

Bilaminer Disc Components

What are the Epiblast and the Hypoblast?

100

Social Determinants of Health

What are the the economic and social conditions that influence individual and group differences in health status?

200

MRN processing

What is 5’ capping and 3’ poly-A tail?

200

Nonspecific arm

What is the Innate immune system?

200

RBC Lifespan

What is 90 - 120 days?

200

The 3 things that effect Drug Absorption

What are lipid solubility, ionization state, and molecule size? 

*Non-ionized (non-charged) molecules cross cellular membranes more easily than charged.

200

Transversion

What is the substitution of a purine (A or G) for a pyrimidine (T or C)?

200

Blastocyst components

What are the Embryoblast and the Trophoblast?

200

Chromatin

What is an array of nucleosomes (DNA wrapped around a histone octamer)?

300

The 3 steps of Transcription

What are Initiation, Elongation, and Termination? 

300

Inflammation

What is the protective responses intended to eliminate the initial cause of cell injury as well as the necrotic cells and tissues resulting from the insults?

                                                       


    

300

O2 binding behavior

What is positive allosteric effect?

*In addition to O2, hemoglobin is also affected by concentrations of 2,3-BPG, CO, H+, CO2, and glucose.

300

The fraction of administered drug that reaches the systemic circulation in a chemically unchanged form.

What is Bioavailability?

*Calculated relative to plasma concentrations reached by IV injection.  

It is the ratio of the area under curve (AUC) calculated for oral administration relative to the AUC calculated for IV injection.

*The liver metabolizes many drugs and may severely alter the concentration reaching the circulatory system. This first pass through the liver thus can greatly reduce the bioavailability of the drug. 

*Bioequivalence:  How drugs compare in terms of bioavailability (and, therefore, time to achieve peak blood concentrations)

300

Allelic Heterogeneity  

What are similar phenotypes caused by different mutations in the same gene? (All in one)

300

Formation of the germ layers

What is Gastrulation?

300

CO binding behavior

What is competitive antagonism?

***CO binds to the ferrous iron in hemoglobin and myoglobin with 200 times higher affinity than O2 . 

competitive antagonism- CO and O2 compete for the same binding site.

 In addition to keeping O2 off the heme iron, bound CO greatly increases the oxygen-binding affinities of the remaining heme groups, further impairing oxygen transport. 

Despite its high affinity, CO binding is reversible. In a normally breathing patient with CO poisoning, O2 gradually displaces the CO from the heme iron. CO is exhaled through the lungs, and the patient recovers slowly in the course of several hours. Carbon monoxide poisoning can be treated with hyperbaric oxygen, which accelerates this process. 

Patients with CO poisoning are not cyanotic because CO hemoglobin has a bright cherry-red color

Throbbing headache, confusion, and fainting on exertion occur when 30% to 50% of the heme groups are occupied by CO and a CO saturation of 80% is rapidly fatal. 

Smokers have 4% to 8% of their hemoglobin in the CO form. 

400

Nucleosome

What is DNA wrapped around a histone octamer that is composed of histones H2A, H2B, H3 and H4? 

400

Results of Inflammation

What are Heat, Swelling, Pain, Redness, and Tenderness?

400

Glutathione amino acids

What are Cysteine, Glycine, and Glutamate?

*Why is Cysteine important?

400

The volume of distribution

What represents the volume of body fluid in which a drug appears to be dissolved, assuming uniform distribution?

*Vd = Q/Cp

Where Q is the total amount of drug in the body and Cp is the plasma drug concentration

*In general:

Higher Vd = not as much in plasma relative to total in body; likely more in cells.

Lower  Vd = more in plasma relative to total in body; likely less in cells.

400

Locus Heterogenity

What is the same phenotype caused by mutations in the same gene? 

400

The 3 divisions of mesoderm

What are Paraxial, Intermediate, and Lateral Plate (subdivided into Visceral and Parietal layers)?

400

Child uses the caregiver's response to the situation to determine how he/she should react.

What is social referencing?

500

Histone Covalent Modifications

What are acetylation (ac), methylation (me), phosphorylation (ph) and ubiquitination (ub1)?

500

First responders

What are Neutrophils

500

Band 3

What is the anion channel that mediates Cl-/HCO3 exchange in RBCs?

500

Therapeutic Index

What is the ratio of the toxic dose divided by the therapeutic (effective) dose, TD50/ED50?

*It is a measure of a drug’s safety because a large value indicates a wide margin between doses that are effective and doses that are toxic.  

A low therapeutic index indicates that there is a high risk of toxicity (Example: Warfarin).

500

The 3 types of Point Mutations?

What are silent, missense, and nonsense?

500

Formation of Organs

What is Organogenesis? 

500

The Bohr effect

What is an acidic environment reduces the oxygen affinity of hemoglobin, resulting in the release of bound oxygen?

*Oxygen is released when protons bind to hemoglobin. About 0.6 protons bind when one oxygen molecule leaves.  An increased proton concentration pushes the reaction to the left, releasing oxygen from hemoglobin. 

In addition to its acidifying action, CO2 reduces the oxygen affinity of hemoglobin by reversible covalent modification of the terminal amino groups of the α- and β-chains. This reaction forms carbamino hemoglobin:

600

Enzyme that carries out Histone Acetylation                                                   


    

What is Histone Acetyltransferase (HAT)?

600

Removes debris

What are Macrophages?

600

Two shunts of Glycolysis

What are the 2-3 BPG Shunt and Pentose Phosphate Shunt?

1. Synthesizes 2,3-BPG (or 2,3-DPG) via bisphosphoglycerate mutase (BPGM)

2. Makes NADPH to maintain glutathione and ascorbate and reduce H2O2 and oxygen free radicals (needs G6PH)

600

A protective mechanism guarding the brain against circulating molecules.

What is the Blood Brain Barrier?

*In brain, capillaries not only lack fenestrations, the endothelial cells composing these structures have “tight junctions” which hold the cells together tightly and prevent passage of molecules with low lipophilicity.

600

Frame Shift

What is the addition or deletion of 1-2 nucleotides or more, leading to subsequent misreading of codons and usually a truncated protein?

600

Formation of the nervous system

What is Neurulation? 

600

Middle childhood (ages 6-12) in Piaget's Cognitive Development Theory

What is the Concrete Operational Stage?

700

Chromatin Remodeling factor associated with transcriptional activation

What is Swi/Snf? 

*ATP-dependent chromatin remodeling factors alter chromatin structure to regulate transcription.

Chromatin remodeling complex has ATPase activity.

Example: Swi/Snf complex

Swi/Snf complex is generally associated with transcriptional activation.

700

Lack fine specificity

What are the receptors of the Innate immune system?

700

Fe3+ disease state

What is Methemoglobinemia?

*Usually controlled by methemoglobin reductase and NADH (from glycolysis) Patients treated with methylene blue (restores reducing environment).

700

Biotransformation

What is the metabolism of (lipophilic) drugs into more easily excreted hydrophilic compounds?

*Generally, making the drug molecules more polar and more water soluble.

700
Affected mother passes on to all offspring, no risk to offspring from affected father

What are mitochondrial genes? 

700

Lateral Body Folding

What is when left and right lateral body folds join/fuse ventrally in the midline of the body?

*Ectopic Cordia

700

Secondary Prevention

What is screening to identify diseases in the earliest stages, before the onset of signs and symptoms?

  • Primary prevention – a community implements the CATCH nutrition program in schools district wide
  • Secondary prevention – providing a CT scan for individuals with a history of smoking
  • Tertiary prevention – daily low-dose aspirin for those with previous myocardial infarction
  • Quaternary prevention – wait and see for ear pain, *PSA levels in the elderly





800

Location of DNA methylation

What are CpQ islands?

800

Chemotactic Effect

What is extravasation & diapedesis of neutrophils?

                                                       


    

800

Hemoglobin Varients

What are Embryonic hemoglobin (Hbε) (2ζ/2ε), Fetal hemoglobin (HbF) (2α/2γ), Adult hemoglobin A1 (HbA1), and Adult hemoglobin A2 (HbA2) (2α/2δ)?

800
Phase II reactions

What are generally conjugation reactions which make compounds more water soluble?

*Phase I Reactions:

Generally make compounds less active or less toxic and/or more water soluble, but can make them more toxic.

*Generally, Phase I reactions occur first followed by Phase II; however, this is not always the case.  Phase I or Phase II reactions may occur solely or a Phase II reaction may be followed by a Phase I reaction.

800

Used to amplify DNA which can then be visualized on a gel or sequenced

What is PCR?

800

Cephalocaudal folding

What is when the cranial & caudal ends of the embryo move towards each other, ventrally?

800

Rate limiting Heme synthesis enzyme

What is ALA synthase?

*Step 1 is ALA synthase, step 2 is ALA dehydrogenase, which is zinc dependent. Lead poisoning disrupts step 2.

900

3 epigenetic regulations of gene expression

What are DNA methylation, Histone modifications, and ATP dependent chromatin remodeling complexes?

*

All cell types in our body have the same DNA sequences, but expressed differentially. This is due to different chromatin structures in different cell types.

Therefore, gene expression is controlled epigenetically

--By DNA methylation.

--By histone modifications.

--By ATP-dependent chromatin remodeling factors.

Hence, epigenetics plays important roles in differential gene expression in different cell types in our body.

900

The 3 Functional Types of Innate Immune System Receptors

What are Phagocytic, Chemotactic, and Effector molecular induction?    

900

HbS mutation

What is Glutamate to Valine?

*Hydrophobic clumping of exposed Valines cause polymerization

*HbC is Glutamate to Lysine

*Treatments include Hydroxyurea, which increases HbF and Voxelotor, which increases hemoglobin's affinity for O2

900

Pre-ganglionic neurotransmitter

What is Acetylcholine?

900

ABO locus

What is the gene on chromosome 9 that encodes glycosyltransferase?

900

Latin for mulburry

What is Morula?

*A solid ball of 16 cells resulting from division of a fertilized ovum, and from which a blastula is formed.

900
Hemoglobin gene that appears to be constitutively active during development

What is a-globin? 

1000

Transcriptional factor involved in the silencing of fetal hemoglobin expression

What is BCL11A?

*KLF1 activates BCL11A expression, so it also influences hemoglobin switching both by directly activating β-globin in the adult stage as well as promoting the expression of the γ-globin silencer BCL11A.

1000

Endogenous Pyrogens

What are IL-1, IL-6, TNF-a?

                                                       


    

1000

Types of alpha and beta Thalassemias

What are 1α silent, 2α trait, 3a HbH disease, 4a major (hydrops fetalis), 1b silent or trait, 2b major (Cooley anemia, beta null)?

1000

UDP-glucuronosyl transferase

What is the enzyme that conjugates Bilirubin with glucuronic acid for excretion? 

*Bilirubin is conjugated with glucuronic acid for excretion. The UDP-glucuronosyl transferase enzyme is not well expressed in newborns and is lowest in premature infants. Bilirubin can accumulate in babies with low expression levels of this enzyme and they can develop jaundice.

1000

The 2 types of gene polymorphisms seen on PCR

What are single nucleotide and VNTR (variable number tandem repeats)?

1000

Cardiovascular neural crest derivatives

What are the Aorticopulmonary septum and the Semilunar Valves? (via the outflow tract endocardial cushions)

1000
NO hemoglobin binding state

What is the T(tense, oxygenated) state?

*Hemoglobin binds/transfers NO in the T state, and transports NO in the R state. Doing this, Hemoglobin facilitates detoxification and transport of NO -- Conversion of unstable free plasma NO to stable X-S-NO

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