Nucleic Acid Isolation
PCR
SNPs
STRs
Misc.
100
Complete the sentence:

The higher the elution volume, the _______ the yield, and the _______ the concentration. 

The higher the elution volume, the higher the yield, and the lower the concentration.

100

These are the steps of PCR.

What is denaturation, annealing, and extension

100

These are the 2 main types of cancer related genes.

What are oncogenes and tumor suppressor genes

100

This is what you would call a repeating segment consisting of 4 base pairs.

What is a tetranucleotide repeat

100

This is the purpose of a ladder in gel electrophoresis.

What is to provide a standard to measure fragment size

200

Nucleic Acids bind to Cellulose Matrices under these conditions.

What is the presence of high salts and alcohols
200
This is the definition of reverse transcriptase.

What is an enzyme that synthesizes DNA from an RNA template

200

What does SNP stand for?

Single Nucleotide Polymorphism

200

This is the definition of a tumor marker.

What is anything present in cancer cells that provides information about that cancer

200

In gel electrophoresis, how does gel concentration affect the separation of DNA fragments?

Higher concentration gels are more effective at separating smaller fragments
300

This is the correct order of steps for Nucleic Acid Isolation.

What is: Sample Disruption - Clearing Debris - Binding to Purification Matrix - Washing - Elution

300
This Chromosomal translocation creates the Philadelphia chromosome.

What is chromosome 9 joining with chromosome 22

300

The C allele (Pro72) encodes this amino acid at codon 72.

What is Proline

300

Explain the difference between Germline mutations and Somatic mutations.

Germline mutations - inherited changes in DNA

Somatic mutations - changes in DNA that are acquired through lifetime

300
qPCR uses fluorescent dyes or probes for this purpose.

What is to monitor amplification in real time

400

Name two methods of physical sample disruption.

What are:

Sonication

Tissue Grinders

Bead-Beating

400

What is a "No RT Control" in an RT-PCR experiment

A reaction without reverse transcriptase to test for DNA contamination
400
This is the primary function of SNPs as biological markers.

What is: 

To locate genes associated with disease, drug response, and traits

400

In Lynch syndrome, this is the "second hit" required for cancer development.

What is loss of the remaining functional mismatch repair allele

400

There are approximately this many nucleotides in the human genome.

What is 3 billion

500

List three different purification formats.

What are:

Membranes, Slurries, Magnetic Particles, Columns, and Plates

500

While reviewing your BCR-ABL melt curve, you see two peaks. What causes two peaks?

What is non-specific amplification

500

This TP53 allele is more efficient at triggering apoptosis.

What is Arg72 (G allele)

500

If an STR locus has different allele lengths on two homologous chromosomes, that locus is called _______.

What is heterozygous

500
Capillary electrophoresis can measure to this degree.

What is one base pair

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