Moving Around
pwd
What is my Present Working Directory
tail sequence.fastq
man prokka
What is show the manual for the program prokka?
What is a way to display every line in <file> that includes one.
awk -F'\t' '{print $2}' <my_file> | less -S
What is print the second column of a file and view with less?
mv <file> ../<new_file>
What is move <file> up one level and rename as <new_file>
less -S textfile.txt
What is the best way to view a text file without line wrapping?
blastx -help
What is show the help menu for blastx?
grep -c '>NODE' contigs.fasta
What is count the number of contigs in a SPAdes assembly?
ls > file.txt
What is save the list of directory contents to a file?
cp Sample*/*.fastq.gz ./
What is copy all my fastq files from all directories to my current directory?
more my_reads.fastq.gz
What is the worst way to attempt to open a gzipped file?
whatis cal
What is show the one line description of the calendar program?
grep '>' contigs.fasta | less
What is display all the headers in my contigs file?
ls | less
What is view the list of files in your current directory with less?
cd ~/*/
What is move into the first directory in my home directory?
grep -v '#' alignment.sam | tabview -
What is view a sequence alignment file without the header in an excel like format?
How do I run spades if I have a diploid organism?
What is google?
history | grep cat
what is print all the commands that contain the word cat?
ls >> file.txt
What is append the list of files in my current directory to a file?