Microbe Identification
Sequencing Tools
Microbes by the Numbers
Nutrient Cycles
Types of Symbioses
100

A photosynthesizing microbe with a classic glass-like (opal) structure

Diatom

100
This tool sequences taxonomic identity only

amplicons

100
Phytoplankton produce XX% of the world's oxygen

~50%

100

This process turns atmospheric nitrogen into usable N

Nitrogen fixation

100

This is a beneficial partnership for all involved

mutualism

200
The most common phytoplankton to find in a scum-covered pond

cyanobacteria

200

This tool sequences the expression of genes

RNAseq/transcriptomics
200

Diatoms account for XX% of that oxygen production

~40%

200

This process takes oxidized N and returns it to dinitrogen gas

Denitrification

200

This is beneficial for one party and neutral for the other

commensalism

300

A group of phytoplankton that often forms toxins and can be both autotrophic & heterotrophic

Dinoflagellates
300

This method sequences all the functional genes one organism has

genomics

300

This many virus particles are in the ocean

300

The phosphorus cycle is unique because of this property

no gaseous/atmospheric phase

300

This is negative to one party and beneficial to the other

parasitism

400

The most abundant photosynthesizing species in the global ocean

Prochlorococcus

400

This family of methods involves sequencing a whole community at once

meta-omics (metagenomics, metatranscriptomics)

400

This is the maximum ratio of viruses to microbes in the ocean 

150 to 1

400

This process short-circuits denitrification (e.g., ammonium into N2)

anammox

400
Both organisms are fighting for resources

competition

500

The most abundant heterotrophic bacterial group in the oceans

The SAR11 clade
500

This newer technology allows higher resolution on sequence content by reducing gaps

long-read sequencing (PacBio, Nanopore)
500

Phytoplankton fix this much carbon annually

~30 to 50 million metric tons of C

https://pubmed.ncbi.nlm.nih.gov/24311124/

500

This is a major human-contributed source of phosphates

fertilizer

500

One partner is harmed, the other is not affected

amensalism